Re-apply Color Palette layer effect isn’t working for me as expected.
It seems to mostly work, but the first colour in each subpalette is replaced with the second colour.
It used to work with this file, but it’s been a good while since I’ve used it so maybe I’m doing something wrong.
I’m not sure if this is related, but I think it is? When I import an image that is not an indexed .PNG, color “#FFFFFF” gets pushed in the color palette.
You have different black values in your palette. The layer effect expects all colors to be grouped, also the ones you have drawn your image width. The black in your image uses color index 12 (marked red) but for the effect to calculate correctly it must be a black from the color groups (starting at palette index 64). So, just replace all black 13 with black 64 (marked green) and it looks as you expect it to be.